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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PAPOLG
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX13169055
GSM5695523: PAPgamma shZ1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PAPOLG
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
HeLa cells
cell line
HeLa
treatment
shRNA ZFC3H1
passages
10-25
chip antibody
anti-PAPgamma (Bethyl A301-427A)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed in SupT1 T-ALL cells using the ChIP IP High Sensitivity (Active Motif 53040). ChIP-seq libraries were constructed using the Next Gen DNA Library Kit (Active Motif 53216 and 53264).
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25246038
Reads aligned (%)
96.3
Duplicates removed (%)
10.8
Number of peaks
1124 (qval < 1E-05)
hg19
Number of total reads
25246038
Reads aligned (%)
95.4
Duplicates removed (%)
12.4
Number of peaks
1126 (qval < 1E-05)
Base call quality data from
DBCLS SRA