Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAPOLG

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa
treatment
shRNA ZFC3H1
passages
10-25
chip antibody
anti-PAPgamma (Bethyl A301-427A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed in SupT1 T-ALL cells using the ChIP IP High Sensitivity (Active Motif 53040). ChIP-seq libraries were constructed using the Next Gen DNA Library Kit (Active Motif 53216 and 53264).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
25246038
Reads aligned (%)
96.3
Duplicates removed (%)
10.8
Number of peaks
1124 (qval < 1E-05)

hg19

Number of total reads
25246038
Reads aligned (%)
95.4
Duplicates removed (%)
12.4
Number of peaks
1126 (qval < 1E-05)

Base call quality data from DBCLS SRA